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  • Welcome
  • Foreword
    • Background
    • Navigating the Handbook
    • Emergence as The Turing Way Strategy
    • Embracing the Principles of Digital Commons
    • Community and Community Roles
    • Governance
    • How to Cite
    • Frequently Asked Questions
  • Guide for Reproducible Research
    • Overview
      • Definitions
      • Added Advantages
      • Barriers
      • Resources
    • Open Research
      • Open Data
      • Open Source Software
      • Open Source Hardware
      • Open Access
      • Open Notebooks
      • Open Scholarship
      • Checklist
      • Resources
    • Version Control
      • Version Control Workflow
      • Version Control and Branches
      • The Git Version Control Software
      • Git for Research Projects
      • Git Using the Command Line
        • Git Commit Command
        • Retrieving and Comparing Versions
        • Git Branches
        • Merging Branches in Git
        • Interactive, Visual Git
        • Git Commands to Work on GitHub
        • Summary Table of Git Commands
      • Version Control for Data
      • Personal Stories
      • Checklist
      • Resources
    • Licensing
      • License Compatibililty
      • Ethics-informed Licensing
      • Data Licenses
      • Hardware Licenses
      • Machine Learning Model Licenses
        • Case Studies: Choosing an ML License
      • Checklist
    • Research Data Management
      • Research Data
      • Finding Data
      • Data Management Plan
      • The FAIR Principles and Practices
      • Personal data management
      • Data Storage and Organisation
      • Data Organisation in Spreadsheets
      • Documentation and Metadata
      • Methods and Protocols
      • Electronic Lab Notebooks (ELNs)
      • Data Curation
      • Data Visualisation
      • Data Repositories
      • Sharing and Archiving Data
      • Data Article
      • Checklist
      • Personal Impact Stories
      • Resources
    • Reproducible Environments
      • Capturing Computational Environments
      • Package Management Systems
      • YAML
      • Virtual Machines
      • Containers
      • Resources and Checklist
    • BinderHub
      • Introduction to BinderHub
      • Compute Resources
      • Build Your Own BinderHub
      • Resources for BinderHub
    • Code quality
      • Code Style and Formatting
      • Writing Robust Code
      • Checklist and Resources
    • Code Testing
      • General Guidance for Testing
      • Overview of Testing Types
      • Smoke Testing
      • Unit Testing
      • Integration Testing
      • System Testing
      • Acceptance and Regression Testing
      • Runtime Testing
      • Test Driven Development
      • Challenges and Exceptional Cases
      • Checklist for Code Testing
      • Further Recommendations
    • Code Reviewing Process
      • Motivation for code reviewing
      • Recommendations for code reviewing
      • Code review workflow
      • Checklist for code reviewing
      • Resources for code reviewing
    • Reusable Code
      • Overview of Code Reuse
      • Detailed Recommendations for Code Reuse
    • Continuous Integration (CI)
      • Intro to Continuous integration (CI)
      • Getting started with GitHub actions
      • Building a Block of a GitHub actions
      • Best practices and recommendations
      • Checklist and Resources
    • Reproducible Research with Make
      • Learn "Make" by examples
      • Debugging Makefiles
      • Case Study of a Reproducible Paper
      • Including numerical results and tables
      • Resources for "Make"
      • Appendix
    • Research Compendia
    • Risk Assessment
      • Complexity and Impact of Risk Assessment
      • Summary of Risk Assessment
    • Case Studies
      • A Statistical Methods Manuscript
  • Guide for Project Design
    • Overview of Project Design
      • Planning for Project Design
      • Collaborative project documentation
      • Reproducibility Methods
      • Version Control and Documentation
      • Sharing Your Research Work
    • Project Design Checklist
    • Creating Project Repositories
      • Landing Page - README File
      • Roadmapping
      • Contributors and Communication Pathways
      • Participation Guidelines
      • Advanced Structure for Data Analysis
      • Further Recommendations
    • Personas and Pathways
      • Persona Creation Tool
      • Contributor Pathways
    • File Naming Convention
    • Code Styling and Linting
      • Guidelines for Code Styling
      • Writing Human Readable Code
      • Code Styling Tools
    • Sensitive Data Projects
      • Types of Sensitive Data
      • Personal Data
      • Confidential Data
      • Biological Data
      • Metadata
      • Combined Datasets
    • Managing Sensitive Data Projects
      • Informed consent
      • Data Privacy Strategies
      • Sharing Sensitive Data
      • Resources
    • Working on Sensitive Data Projects
      • Working with Trusted Research Environments
      • Privacy Preserving Machine Learning
      • Keeping Sensitive Files Secure
      • Sharing Your Jupyter Notebook
      • Removing Sensitive Data From GitHub
      • Further Recommendations
    • Data Governance
      • Data Governance for the Machine Learning Pipeline
      • BigCode Data Governance Case Study
  • Guide for Communication
    • Overview of Guide for Communication
      • Principles of Communicating with Wider Audiences
      • Communicating Accessibly
      • Resources and Recommendations
    • Open Scholarship
      • Open Education
    • Blogs for Research Communication
      • Building a Webpage for Blogs
      • Personal stories - Blogs
    • Lay Summaries
      • Personal Stories - Lay summaries
    • Podcasts for Research Communication
      • Personal Stories - Podcasts
    • Presenting Posters and Conference Talks
      • Presenting at Remote Events
      • Personal stories - Presenting Outside of Your Discipline
    • Social Media for Research Communications
      • Tips for starting with X
      • Managing multiple X accounts
    • Research Objects in Action
      • Lifecycle
      • Implementation
    • Making Research Objects Citable
      • Steps for Making Research Objects Citable
      • Citing Research Objects
      • Software citation with CITATION.cff
      • Create a CITATION.cff using CFFinit
      • Linking Research Objects
      • ORCID to Collect your Research Objects
      • Checklists and Resources
    • Publishing Different Article Types
      • Data Papers
      • Methods Papers
      • Micropublishing
      • Registered Reports
      • Software Papers
    • Communications in Open Source Projects
      • Issue Tracking
      • Communication Channels
    • Authorship and Contributions on Academic Articles
      • Overview of Academic Authorship
      • Types of Authorship Misconduct
      • Discipline Specific Authorship Traditions
      • Large and Equitable Authorships
      • Tips on How to Get Authorship Right
      • Personal Stories - Authorship on Interdisciplinary Projects
      • Personal Stories - Large Collaborative Research Community
      • Resources
    • Peer Review
      • Peer Review
      • Open Peer Review
      • Guidance on Peer Review for a Journal
      • Guidance on Code Review
      • Resources
    • Binder
      • Zero-to-Binder
  • Guide for Collaboration
    • Getting Started With GitHub
      • Motivation for Using GitHub
      • First steps on GitHub
      • Using more GitHub features
      • Advanced GitHub features
    • Maintainers and Reviewers on GitHub
      • Project Maintenance
      • Ownership and Permissions
      • Reviewing Contributions
      • Merging Contributions
      • Resources
    • Organising Meetings
    • Organising Online Coworking Calls
    • Organising Conferences
      • Registration Forms
      • Template for Registration Form
    • Chairing Events
    • Participating in Events
    • Hosting Events with Public Contributors
      • Planning your PPIE Event
      • Location and Venue Planning
      • Scheduling and Agenda Considerations
      • Communication Strategy and Planning
      • Inclusive Social and Networking
      • Technology Considerations
      • Additional Resources
    • Informal Coffee Chats
    • Tools for Facilitating Collaboration
    • Facilitating Stakeholder Engagement
    • Managing a New Community and Team
      • Guide to Planning a Community
      • Addressing Technical Issues
      • Valuing Diversity and Differences
      • Teamwork
    • Academic-Industry Collaborations
      • Establishing an Academic-Industry Collaboration
      • Community Building in an Academic-Industry Collaboration
      • Case Studies and Best Practices in Academic-Industry Collaboration
        • Case Study Library
        • Online Resources
    • Ambassador Schemes
      • Establishing and Running an Ambassador Scheme
      • Turing-Roche Community Scholar Scheme Personal Story
    • Team Manual
      • On and Offboarding Team Members
    • Open Leadership in Data Science
      • Important Features of Leadership
      • Building Healthy Leadership Skills
      • Creating Leadership Opportunities
      • Personal Story from Running a Hackathon
      • Personal Story of Leadership by a Data Librarian
    • Research Infrastructure Roles
      • Community Managers Overview
      • Data Stewards Overview
      • Data Steward Personal Story
      • Data Wrangler Overview
      • Research Software Engineers Overview
      • Research Software Engineering Personal Story
      • Research Application Manager Overview
      • Research Infrastructure Developer Overview
    • Remote Collaboration
      • Pros and Cons
      • Guidelines for Remote Collaboration
      • Managing Distributed Teams
      • Useful Resources
    • Hybrid Collaboration
      • Challenges faced during Hybrid Collaboration
      • Guidelines for Hybrid Collaboration
      • Resources
    • Shared Ownership in Open Source Projects
      • Project Ownership
      • Shared Ownership Models
      • Challenges with Applying Ownership Models Retroactively
      • Nudging for a Better Default
    • Sustainability of Open Source Projects
      • Examples of Open Source Business Models
  • Guide for Ethical Research
    • Introduction to Research Ethics
    • Research Ethics Committees Workflows
    • Ethical Decisions in Preclinical Research
    • Law, Policy and Human Rights in Ethics
      • Ethics and law
      • Human rights
      • Further Recommendations
    • Research Ethics for Social Data
    • Data Feminism
      • Examining Power
    • Activism for Researchers
      • Unionisation
      • Whistleblowing
      • Cultural change
      • The Environmental Impact of Digital Research
      • Case study - Robodebt
      • Case study - Google Workers
    • Internal Policy Advocacy
    • Self-Reflection
      • Identity and Positionality
      • Power and Privilege
      • Self-Reflection Prompts
      • Resources
    • Data-Hazards
      • Introduction
      • How To Use
      • Case Study
    • Ethical Considerations for Open Source Governance Models
  • Community Handbook
    • Code of Conduct
      • Code of Conduct in Detail
      • Incident Reporting Guideline
      • Enforcement Manual
      • Acknowledgements
    • Style Guide
      • Citing and Referencing External Resources
      • Cross-Referencing Sections and Chapters
      • Using Figures
      • Glossary, Special Blocks and More Styling
      • Custom Styling
    • Maintaining Consistency
      • Formatting
      • Structure
      • Language
    • Build the Turing Way Book locally
    • Contributing and Developing Chapters - Templates and Workflow
      • Templates
      • Workflow
    • Acknowledging Contributors
      • Community Members and Shared Ownership
      • Record of Contributions
      • Different Contributions and Acknowledgements
    • Translation and Localisation
      • Translation of Open Source Projects
      • Welcome to the Translation and Localisation Team of The Turing Way!
      • Embark on Your Localisation Journey
      • Your Gateway to Crowdsourced Localisation
    • Infrastructure
      • Publishing Contributors
      • External Link Checking
      • DNS
    • Accessibility
      • Event Organising
      • Alt text
    • Communication Platforms
      • Quick Start Guide for Slack
      • Slack Welcome Guide
    • Monthly Newsletters
      • A Process of Creating a newsletter
      • Newsletter's Style Guide
      • The Turing Way Newsletter Template
    • Book Dash Events
      • Application and Review Process
      • Book Dash Logistics
      • Working With an Illustrator
      • Participant Selection Process
      • Book Dash Main Event Plans
      • After the Book Dash
    • Community Coworking Calls
      • Background, Motivations, and Techniques
      • Online Collaboration Cafe
      • Weekly Coworking Calls
      • Organising coworking calls
      • Drop-in Sessions
    • Fireside Chat Series
      • Fireside Chat Planning Checklist
      • Fireside Chat Roles and Responsibilities
    • Giving a Turing Way Talk
    • Template Collection
      • Book Dash Main Shared Document
      • Book Dash Pre-event Onboarding
      • Book Dash GitHub Session
      • Book Dash Template for Shared Notes
      • Book Dash Template for Feedback
      • Online Collaboration Cafe Templates
      • Weekly Coworking Call Template
      • Template for Drafting Newsletters
      • Template for Fireside Chat Shared Notes
  • Afterword
    • Legal Disclaimer
    • Data Usage Statement
    • Contributors Record
    • Collaborators
    • Sub-projects, Working Groups, Informal Initiatives
    • Glossary
    • Bibliography
  • Repository
  • Suggest edit
  • Open issue
  • .md

Resources:

Resources:#

  • American Journal of Experts The ethics of manuscript authorship including a link to the white paper - credit where credits due.

  • British sociological association authorship guidelines

  • Committe of Publication Ethics (COPE) website.

  • How to handle authorship disputes: a guide for new researchers.

  • CRediT Taxonomy

  • London School of Economics Impacts of Social Sciences blog on CRediT Taxonomy

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Peer Review

By The Turing Way Community

The Turing Way Community makes all of their materials publicly available under open source licenses